List of Graduates

Theses are published in the OIST Institutional Repository and are available online.
For more information on the unit, please see this website.

Table of Contents

Graduated in AY2025 (Total as of October 2025: 08)

 

Soon Teh

Supervisor Name: Hiroki Takahashi
Research Unit: Experimental Quantum Information Physics Unit
Thesis: Ion Trapping with a Laser-written 3D Miniaturized Monolithic Linear Paul Trap for Microcavity Integration
Graduation Date: 2025 October 31

 

Hend Samniya

Supervisor Name: Gail Tripp
Research Unit: Human Developmental Neurobiology Unit
Thesis: Language Use, Monitoring, and Repair in the Social and Narrative Discourse of Children with and without ADHD
Graduation Date: 2025 October 31

 

Ilhem Nadia Rabehi

Supervisor Name: Mahesh Bandi
Co-Supervisor: Mahesh Bandi
Research Unit: Nonlinear and Non-equilibrium Physics Unit
Thesis: Exploring the Properties of Hole-Transport Materials for Perovskite Solar Cells: Toward Scalable and Ultra-Flexible Applications
Graduation Date: 2025 September 30

 

Jiahao Zhang

Supervisor Name: Ryota Kabe
Research Unit: Organic Optoelectronics Unit
Thesis: From Bottom to Top Interfaces and Layers: the Holistic Engineering Approach for Efficient, Stable and Large-Area n-i-p Structured Perovskite Solar Cells
Graduation Date: 2025 September 30

 

Nonno Hasegawa

Supervisor Name: David Armitage
Research Unit: Integrative Community Ecology Unit
Thesis: Spatial Population Genetics of Tripartite Arthropod Symbioses
Graduation Date: 2025 September 30

 

Dan Kozome

Supervisor Name: Paola Laurino
Research Unit: Protein Engineering and Evolution Unit
Thesis: Exploration and Engineering of Protein Sequence Space via Insertion and Deletions
Graduation Date: 2025 September 30

 

Yoshiki Ochiai

Supervisor Name: Paola Laurino
Research Unit: Protein Engineering and Evolution Unit
Thesis: Exploring and Engineering DNA/RNA Methyltransferases for Development of RNA Labeling Tools
Graduation Date: 2025 September 30

 

Lazzat Aibekova

Supervisor Name: Evan P Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: The Evolution and Functional Morphology of the Ant Mesosoma
Graduation Date: 2025 September 30

Graduated in AY2024 (Total as of August 2025: 40)

 

Yi-Shan Cheng

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Information-Theoretical Analysis of Team Dynamics in Football Matches
Graduation Date: 2025 August 31

 

Munissa Sadykova

Supervisor Name: Hidetoshi Saze
Research Unit: Plant Epigenetics Unit
Thesis: Epigenetic Regulation of Cold Stress Response and Memory in Arabidopsis thaliana
Graduation Date: 2025 August 31

 

Tanomi Yamamura

Supervisor Name: Jeffery Wickens
Research Unit: Neurobiology Research Unit
Thesis: Effects of Exogenous Testosterone on the Estrous Cycle, Impulsivity, and Dopamine Transmission in Female Rats
Graduation Date: 2025 August 31

 

Akira Kawano

Supervisor Name: Ichiro Masai
Co-Supervisor: Greg Stephens
Research Unit: Developmental Neurobiology Unit
Thesis: Decomposing Predictive Information in Social Dynamics
Graduation Date: 2025 August 31

 

Yuki Tara

Supervisor Name: Vincent Philibert Laudet
Co-Supervisor: Tadashi Yamamoto
Research Unit: Marine Eco-Evo-Devo Unit
Thesis: Critical Role of YTHDF2 and CCR4-NOT Complex in Pancreatic β-cell Homeostasis
Graduation Date: 2025 August 31

 

Tatiana Gridneva

Supervisor Name: Julia Khusnutdinova
Research Unit: Coordination Chemistry and Catalysis Unit
Thesis: Development of Red-Emissive Mechanoresponsive Polymers Incorporating Dynamic Photoluminescent Copper(I)-Pyridinophane-Arylamide Mechanophores
Graduation Date: 2025 July 31

 

Mao-Ting Hsu

Supervisor Name: Jeff Wickens
Co-Supervisor: Kazumasa Tanaka
Research Unit: Neurobiology Research Unit
Thesis: Cholinergic Interneurons of the Dorsomedial Striatum Mediate Winner-Loser Effects on Social Hierarchy Dynamics in Male Mice
Graduation Date: 2025 July 31

 

Xiaochen Fu

Supervisor Name: Izumi Fukunaga
Research Unit: Sensory and Behavioural Neuroscience Unit
Thesis: Probing Stimulus Encoding in the Olfactory Bulb Using Synthetic Olfactory Stimuli
Graduation Date: 2025 July 31

 

Akyl Shakir

Supervisor Name: Eliot Fried
Research Unit: Mechanics and Materials Unit
Thesis: Effects of Incompatible Distortion Rates in Fluid Dynamics
Graduation Date: 2025 June 30

 

Alexey Vylegzhanin

Supervisor Name: Sile Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Light Interaction with Cold 87Rb Ground and Rydberg States via an Optical Nanofiber and in an Optical Resonator
Graduation Date: 2025 June 30

 

Ivan Shpurov

Supervisor Name: Tom Froese
Research Unit: Embodied Cognitive Science Unit
Thesis: On the Analysis of Collective Dynamics in Social Groups with Bees and Football Players as Case Studies
Graduation Date: 2025 June 30

 

James Miloslav Colin Osborne

Supervisor Name: Fujie Tanaka
Research Unit: Chemistry and Chemical Bioengineering Unit
Thesis: Catalytic Bond-Formation Reactions at the γ-Position of β-Ketophosphonates: Asymmetric Mannich Reactions and Formal Aldol Condensation Reactions
Graduation Date: 2025 May 31

 

Mohamed Mostafa Kamal Eltabbal

Supervisor Name: Bernd Kuhn
Research Unit: Optical Neuroimaging Unit
Thesis: Cerebellar Control of Interceptive Motor Behavior in Head-Fixed Mice
Graduation Date: 2025 May 31

 

Hoshu Hiyane

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Nonequilibrium Properties of Strongly Correlated One-dimensional Quantum Gases
Graduation Date: 2025 April 30

 

Deviana Lidya David

Supervisor Name: Marylka Yoe Uusisaari
Research Unit: Neuronal Rhythms in Movement Unit
Thesis: Anatomical and Functional Study of the Superior Colliculus Pathway to the Inferior Olive in Mice
Graduation Date: 2025 April 30

 

Keerthy Karthikeyan Menon

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Role of Statistics as a Thermodynamic Resource in Quantum Engines
Graduation Date: 2025 April 30

 

Ya-tzu Chiu

Supervisor Name: Keiko Kono
Research Unit: Membranology Unit
Thesis: Identification of Functional miRNAs Regulating Plasma Membrane Damage-dependent Senescence in Human Fibroblasts
Graduation Date: 2025 April 30

 

Shubham Gautam

Supervisor Name: Evan P. Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: The Diversification of Brain Structure in Ants
Graduation Date: 2025 April 30

 

Aisulu Maipas

Supervisor Name: Keiko Kono
Co-Supervisor: Co-Supervisor: Tadashi Yamamoto
Research Unit: Membranology Unit
Thesis: The Role of the CNOT3 Subunit of the CCR4-NOT Complex in Cellular Senescence
Graduation Date: 2025 April 30

 

Lakshmipriya Swaminathan

Supervisor Name: Marylka Yoe Uusisaari
Co-Supervisor: Greg Stephens
Research Unit: Neuronal Rhythms in Movement Unit
Thesis: Of Movement and Mice: A Study of Movement Variability Using Marker-based 3D Motion Capture and Mathematical Representations of Locomotion on a Treadmill
Graduation Date: 2025 April 30

 

Alessandro Bevilacqua

Supervisor Name: Paola Laurino
Research Unit: Protein Engineering and Evolution Unit
Thesis: Molecular Crowding and Enzyme Dynamics: Unraveling the Complex Interactions in Cellular Environments
Graduation Date: 2025 March 31

 

David Thomas O'Connell

Supervisor Name: Yasha Neiman
Research Unit: Quantum Gravity Unit
Thesis: The Topology, Geometry and Physics of Non-Hausdorff Manifolds
Graduation Date: 2025 March 31

 

Chen Lam Loh

Supervisor Name: Tom Froese
Research Unit: Embodied Cognitive Science Unit
Thesis: An Investigation into Inter-brain Synchrony using Simulation and Experimental Approaches
Graduation Date: 2025 March 31

 

Yazmin Hanani Zurita Gutierrez

Supervisor Name: Evan Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: Predicting Future Ant Invasions and Assessing Community Dynamics After Establishment
Graduation Date: 2025 March 31

 

Soumen Jana

Supervisor Name: Bernd Kuhn
Research Unit: Optical Neuroimaging Unit
Thesis: Feedforward Disinhibition of Purkinje Neuron Dendrites by Molecular Layer Interneurons During Sensory/Motor Processing
Graduation Date: 2025 March 31

 

Yuta Yamazaki

Supervisor Name: Keiko Kono
Research Unit: Membranology Unit
Thesis: Comprehensive Identification of Plasma Membrane Repair Proteins Uncovered the Clathrin-mediated Endocytosis-dependent Repair Protein Delivery Mechanisms
Graduation Date: 2025 February 28

 

Gaurav Ganesh Agavekar

Supervisor Name: Evan Economo
Co-Supervisor: Gene Myers
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: The Genomic Landscape of Multi-trait Phenotypic Convergence in Strumigenys Trap-jaw Ants
Graduation Date: 2025 February 28

 

Gaston Sivori

Supervisor Name: Tomoki Fukai
Co-Supervisor: Bernd Kuhn
Research Unit: Neural Coding and Brain Computing Unit
Thesis: Biologically Plausible Synaptic Plasticity Model for Rapid Neuronal Tuning
Graduation Date: 2025 February 28

 

Julian Katzke

Supervisor Name: Evan Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: The Evolution of Ant Mandibles & Advancing Comparative Morphology in 3D
Graduation Date: 2025 February 28

 

Tai Duong Anh Tran

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Chaos, Correlations and Entanglement in Strongly-correlated 1D Mixtures of Ultra-cold Bosons
Graduation Date: 2025 January 31

 

Jose Carlos Patoc Pelayo

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Ultracold Atoms: Applications in Metrology and Fundamental Properties of Quantum Droplets
Graduation Date: 2024 December 31

 

Roman Koshkin

Supervisor Name: Tomoki Fukai
Research Unit: Neural Coding and Brain Computing Unit
Thesis: Unraveling Neuronal Cell Assemblies: From Computational Models to Pattern Detection
Graduation Date: 2024 December 31

 

Sachie Yukawa

Supervisor Name: Hiroki Ishikawa
Co-Supervisor: Hiroaki Kitano
Research Unit: Immune Signal Unit
Thesis: Seasonal Variation in Glycemic Control and Lifestyle in Middle-aged Non-diabetic Individuals
Graduation Date: 2024 December 31

 

Charles Whitaker

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: The Role of the AP-1 Transcription Factor JunB in the Maintenance and Function of Mature T Helper Cells
Graduation Date: 2024 December 31

 

Mohamed Shoieb Mohamed Abdelgawad

Supervisor Name: Marco Edoardo Rosti
Co-Supervisor: Amy Shen
Research Unit: Complex Fluids and Flows Unit
Thesis: The Interplay of Elasticity and Plasticity in Elastoviscoplastic Fluid Flows in Complex Configurations
Graduation Date: 2024 November 30

 

Michael S Izumiyama

Supervisor Name: Timothy Ravasi
Research Unit: Marine Climate Change Unit
Thesis: Using Natural Analogues of the Future Ocean to Study the Adaptive Potential of Fish Communities to Environmental Change
Graduation Date: 2024 October 31

 

Ke Wang

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: The Role of JunB in Exhausted CD8 T Cell Populations in Tumors
Graduation Date: 2024 October 31

 

Masato Hirota

Supervisor Name: Hiroki Ishikawa
Co-Supervisor: Keiko Kono
Research Unit: Immune Signal Unit
Thesis: Vps37b and Ramp3 Regulate CD8+ T Cell Response by Facilitating Adaptation to Plasma Membrane Damage
Graduation Date: 2024 September 30

 

Gulfiya Kadyrzhanova

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: Aging Effects on Murine Adoptive T cell Therapy for Solid Tumor
Graduation Date: 2024 September 30

 

Salvatore Andrea Lacava

Supervisor Name: Marylka Yoe Uusisaari
Research Unit: Neuronal Rhythms in Movement Unit
Thesis: The Role of Tails in Maintaining Balance: Neuronal and Behavioral Insights from the Mouse
Graduation Date: 2024 September 30

Graduated in AY2023 (Total as of August 2024: 34)

 

Aditi Sunil Pophale

Supervisor Name: Samuel Reiter
Research Unit: Computational Neuroethology Unit
Thesis: Sleepy Heads: Active and Quiet Sleep in Octopus laqueus
Graduation Date: 2024 August 31

 

Charlotte Rebekah Denman

Supervisor Name: Bernd Kuhn
Co-Supervisor: Gordon Arbuthnott
Research Unit: Optical Neuroimaging Unit
Thesis: Development of a Human Midbrain Organoid Model Containing Microglia for Investigating the Role of Glucocerebrosidase in Alpha-Synuclein Pathology
Graduation Date: 2024 August 31

 

Dongpeng Hu

Supervisor Name: Ichiro Masai
Research Unit: Developmental Neurobiology Unit
Thesis: Dscamb Regulates Zebrafish Cone Mosaic via Filopodium-Mediated Homotypic Recognition
Graduation Date: 2024 August 31

 

Lina Mohamed Koronfel

Supervisor Name: Bernd Kuhn
Research Unit: Optical Neuroimaging Unit
Thesis: Dendritic Voltage Signaling in Cerebellar Purkinje Neurons during Associative Motor Learning
Graduation Date: 2024 August 31
 

Wataru Ohata

Supervisor Name: Jun Tani
Research Unit: Cognitive Neurorobotics Research Unit
Thesis: Investigation of the Sense of Agency in Human–Robot Interaction Based on the Free Energy Principle
Graduation Date: 2024 July 31

 

Santanu Mondal

Supervisor Name: Fujie Tanaka
Research Unit: Chemistry and Chemical Bioengineering Unit
Thesis: Development of Catalytic Asymmetric Reactions of Pyruvates as Nucleophiles
Graduation Date: 2024 July 31

 

Minh Hoan Dinh

Supervisor Name: Julia Khusnutdinova
Research Unit: Coordination Chemistry and Catalysis Unit
Thesis: Synthesis and Reactivity of Transition Metal Complexes Supported by Non-Phosphine Ligands in Metal-Ligand Cooperation and Fluoroalkyl Incorporation
Graduation Date: 2024 June 30

 

Yang Mi

Supervisor Name: Hiroki Ishikawa
Co-Supervisor: Yoe Uusisaari
Research Unit: Immune Signal Unit
Thesis: Maternal Immune Activation Alters Fetal Cerebellar Development and Motor Behavior in Mouse Offspring via Type-I Interferon
Graduation Date: 2024 June 30

 

Muhammad Sirajul Hasan

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Dynamics of Complex Quantum Systems - Engineering and Control in Cold Atomic Systems
Graduation Date: 2024 June 30

 

Prasanna Vijayaraghava

Supervisor Name: Jun Tani
Research Unit: Cognitive Neurorobotics Research Unit
Thesis: Free Energy Based Neural Network Model to Study Embodied Language
Graduation Date: 2024 June 30

 

Leilee Margaret Chojnacki

Supervisor Name: Nic Shannon
Research Unit: Theory of Quantum Matter Unit
Thesis: Analogues of Light and Gravity in the Collective Excitations of Quantum Magnets and Cold Atoms
Graduation Date: 2024 June 30

 

Rio Kashimoto

Supervisor Name: Vincent Laudet
Co-Supervisor: Noriyuki Satoh
Research Unit: Marine Eco-Evo-Devo Unit
Thesis: Unveiling the Genomic and Transcriptomic Landscape of Anemones and Corals: Key Players in the Mutualistic Symbiosis with Algae and Anemonefish
Graduation Date: 2024 May 31

 

Miles Josef Desforges

Supervisor Name: Kenji Doya
Co-Supervisor: Bernd Kuhn
Research Unit: Neural Computation Unit
Thesis: Characterisation of Serotonin, Noradrenaline and Dopamine Release in the Motor Cortex
Graduation Date: 2024 May 31

 

Berta Hudak

Supervisor Name: Liron Speyer
Research Unit: Representation Theory and Algebraic Combinatorics Unit
Thesis: On the Representation Theory of Cyclotomic KLR Algebras
Graduation Date: 2024 April 30

 

Mohamed Amine Boubakour

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Control of Cold Atomic Systems for Quantum Heat Engines
Graduation Date: 2024 April 30

 

Billy Connor Moore

Supervisor Name: Timothy Ravasi
Research Unit: Marine Climate Change Unit
Thesis: Physiological and Transcriptomic Response of Early-Life Stage Clownfish to Future Ocean Warming and Marine Heatwaves
Graduation Date: 2024 March 31

 

Kojiro Suda

Supervisor Name: Keiko Kono
Research Unit: Membranology Unit
Thesis: The Role of Calcium Ion Dynamics and Inter-Organelle Communication During Plasma Membrane Damage-Dependent Cellular Senescence
Graduation Date: 2024 March 31

 

Florian Lalande

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Planetary Systems Insights through Numerical Data Imputation Algorithms and Machine Learning
Graduation Date: 2024 March 31

 

Zhehao Cheng

Supervisor Name: Yoko Yazaki-Sugiyama
Research Unit: Neuronal Mechanism for Critical Period Unit
Thesis: Neuronal Mechanism for Processing Complemental Information of Species Identity and Individual Variation in the Zebra Finch Higher Auditory Cortex
Graduation Date: 2024 March 31

 

Hung-Ju Chiang

Supervisor Name: Ichiro Masai
Research Unit: Developmental Neurobiology Unit
Thesis: Investigation of the Role of Male Germ Cell-Associated Kinase in Zebrafish Photoreceptor Ciliogenesis and Cell Survival
Graduation Date: 2024 March 31

 

Maki Maeda

Supervisor Name: Sile Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Design, Fabrication, and Characterization of Optical Nanofiber Cavities
Graduation Date: 2024 March 31

 

Hsiao-Chiao Chien

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: JunB is Essential for Chromatin Regulation in Pathogenic Th17 Cells
Graduation Date: 2024 March 31

 

Shukla Sarkar

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: Analysis of the Function of JunB in Regulation of CD8+ T Cell Response
Graduation Date: 2024 March 31

 

Sergey Zobnin

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Investigation of the Bayesian Sensory-Motor Integration in the Cerebral Cortex
Graduation Date: 2024 March 31

 

Kota Ishikawa

Supervisor Name: Satoshi Mitarai
Research Unit: Marine Biophysics Unit
Thesis: Effects of Mean Flow and Turbulence on Planktivory by Anchored Garden Eels and Site-Attached Fish
Graduation Date: 2024 February 29

 

Markel Pardo Almanza

Supervisor Name: Yoshinori Okada
Research Unit: Quantum Materials Science Unit
Thesis: Fabrication and Spectroscopic Investigation of a Tunable Magnetic Material and its Heterostructures
Graduation Date: 2024 January 31

 

Sara Emad Mohamed Elagamy Abdelaal

Supervisor Name: Marco Terenzio
Co-Supervisor: Keiko Kono
Research Unit: Molecular Neuroscience Unit
Thesis: Dynein Light Chain Roadblock 1 Regulates FMRP Axonal Transport and Degradation
Graduation Date: 2024 January 31

 

Anjana Krishnadas

Supervisor Name: Yoshinori Okada
Research Unit: Quantum Materials Science Unit
Thesis: Spectroscopic Visualization of Surface Electronic State in High Temperature Superconducting Oxide Thin Films
Graduation Date: 2023 December 31

 

Sarah Yukie Nagasawa

Supervisor Name: Erik De Schutter
Research Unit: Computational Neuroscience Unit
Thesis: Stochastic Spatial Modeling of Vesicle Trafficking of AMPA Receptors to Understand Roles in Synaptic Plasticity
Graduation Date: 2023 December 31

 

Ianto Samuel Cannon

Supervisor Name: Marco Edoardo Rosti
Research Unit: Complex Fluids and Flows Unit
Thesis: Simulations of Multiphase Turbulent Flows
Graduation Date: 2023 November 30

 

Qiao Lu

Supervisor Name: Simone Pigolotti
Research Unit: Biological Complexity Unit
Thesis: Biophysical Modeling of Cas9 Target-searching and Recognition
Graduation Date: 2023 October 31

 

Vivek Pareek

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Unraveling the Nature of Excitons and their Interactions through Time-Resolved Photoemission and Optical Spectroscopy
Graduation Date: 2023 September 30

 

Hunter Daniel Barbee

Supervisor Name: Keiko Kono
Research Unit: Membranology Unit
Thesis: Plasma Membrane Damage-Dependent Senescent Cells Accelerate Wound Healing In Vitro via Soluble Molecules and Increased Extracellular Vesicles
Graduation Date: 2023 September 30

 

Anzhelika Koldaeva

Supervisor Name: Simone Pigolotti
Research Unit: Biological Complexity Unit
Thesis: Population Dynamics of Microorganisms in Spatially Structured Environments
Graduation Date: 2023 September 30

Graduated in AY2022 (Total as of August 2023: 30)

 

Barnaby Smith

Supervisor Name: Yoshinori Okada
Research Unit: Quantum Materials Science Unit
Thesis: Imaging Electronic States in the Charge Density Wave Material CeTe3
Graduation Date: 2023 August 31

 

Rachapun Rotrattanadumrong

Supervisor Name: Yohei Yokobayashi
Research Unit: Nucleic Acid Chemistry and Engineering Unit
Thesis: Machine Learning Guided Exploration of an Empirical Ribozyme Fitness Landscape
Graduation Date: 2023 August 31

 

Osamu Horiguchi

Supervisor Name: Hiroshi Watanabe
Co-Supervisor: Hiroaki Kitano
Research Unit: Evolutionary Neurobiology Unit
Thesis: Identification and Functional Analysis of Group A bHLH Transcription Factor in Ctenophore Bolinopsis mikado
Graduation Date: 2023 August 31

 

Thomas Francis Burns

Supervisor Name: Tomoki Fukai
Research Unit: Neural Coding and Brain Computing Unit
Thesis: Geometry and Topology in Memory and Navigation
Graduation Date: 2023 July 31

 

Shubham Deolka

Supervisor Name: Julia Khusnutdinova
Research Unit: Coordination Chemistry and Catalysis Unit
Thesis: Naphthyridines as Versatile Ligand Scaffolds For Metal-Metal Cooperative Bond Activation and Photocatalysis
Graduation Date: 2023 July 31

 

Ali Rahmani

Supervisor Name: Eliot Fried
Research Unit: Mechanics and Materials Unit
Thesis: The Landau–Levich Problem for a Uniaxial Nematic Liquid Crystal
Graduation Date: 2023 June 30

 

Otis Davey Brunner

Supervisor Name: Satoshi Mitarai
Research Unit: Marine Biophysics Unit
Thesis: The Role of Connectivity in Structuring Community Composition and Diversity at Hydrothermal Vents Across the Northwest Pacific
Graduation Date: 2023 June 30

 

Theodoros Bouloumis

Supervisor Name: Sile Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Metamaterial Plasmonic Tweezers for Enhanced Nanoparticle Trapping
Graduation Date: 2023 May 31

 

Nadine Wirkuttis

Supervisor Name: Jun Tani
Research Unit: Cognitive Neurorobotics Research Unit
Thesis: Social Interaction Under the Free Energy Principle: A Cognitive Robotics Approach
Graduation Date: 2023 April 30

 

Stefano Pascarelli

Supervisor Name: Paola Laurino
Research Unit: Protein Engineering and Evolution Unit
Thesis: Protein Sequence, Structure, and Dynamics Reveal Insights in the Divergence of Protein Functions
Graduation Date: 2023 April 30

 

Tsung-Yen Huang

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: Phosphoenolpyruvate Regulates the JunB-Dependent Pathogenic Th17 Transcriptional Program
Graduation Date: 2023 March 31

 

Yuna Hattori

Supervisor Name: Pinaki Chakraborty
Research Unit: Fluid Mechanics Unit
Thesis: Self-similarity in a Boundary-layer Flow over a Dynamic Boundary: Flow of Air Induced by a Falling Soap Film
Graduation Date: 2023 March 31

 

Friederike Metz

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Machine Learning Applications for the Study and Control of Quantum Systems
Graduation Date: 2023 February 28

 

Qiong Huang

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Multi-Agent Reinforcement Learning for Distributed Solar-Battery Energy Systems
Graduation Date: 2023 January 31


Aleksandra Bliznina

Supervisor Name: Nicholas Luscombe 
Research Unit: Genomics and Regulatory Systems Unit
Thesis: Cross-genome Comparison of Global Oikopleura dioica Populations
Graduation Date: 2022 December 31

 

Christopher Campbell

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Supersymmetry and Nonequilibrium Quantum Dynamics
Graduation Date: 2022 December 31

 

Mohamed Atwa

Supervisor Name: Yoshinori Okada
Research Unit: Quantum Materials Science Unit
Thesis: Doping Evolution of Magneto-Transport Properties in the Layered Magnetic Semimetal Cr(1+δ)Te2
Graduation Date: 2022 December 31

 

Lewis Ruks

Supervisor Name: Thomas Busch
Co-Supervisor: Sile Nic Chormaic
Research Unit:Quantum Systems
Thesis:Wave Propagation and Light-Matter Interactions in Optical Nanofibers and Discrete Media
Graduation Date: 2022 November 30

 

Kimberly Remund

Supervisor Name: Nic Shannon
Research Unit: Theory of Quantum Matter Unit
Thesis: Spin–1 Magnets and Their Excitations
Graduation Date: 2022 November 30

 

Manana Kutsia

Supervisor Name: Ichiro Masai
Research Unit: Developmental Neurobiology Unit
Thesis: Single cell transcriptome analysis reveals heterogeneity and a dynamic regenerative response of quiescent radial glia in zebrafish adult brain
Graduation Date: 2022 November 30

 

Maki Kohata Thomas

Supervisor Name: Satoshi Mitarai
Research Unit:Marine Biophysics Unit
Thesis: Role of Island Systems in Mangrove Biogeography
Graduation Date: 2022 November 30

 

San To Chan

Supervisor Name: Amy Shen
Research Unit: Micro/Bio/Nanofluidics Unit
Thesis: Torsional Instability of Rheologically Complex Liquid Bridges
Graduation Date: 2022 October 31

 

Ainash Garifullina

Supervisor Name: Amy Shen
Research Unit: Micro/Bio/Nanofluidics Unit
Thesis: Estimating Protein-Protein Interactions with High Aspect Ratio Plasmonic Nanopillars
Graduation Date: 2022 October 31

 

Mizuki Kato

Supervisor Name: Erik De Schutter
Research Unit: Computational Neuroscience Unit
Thesis: A Computational Model of Granule Cell Migration and Purkinje Cell Primary Dendrite Selection during Cerebellar Development
Graduation Date: 2022 October 31

 

Christine Joy Guzman

Supervisor Name: Hiroshi Watanabe
Research Unit: Evolutionary Neurobiology Unit
Thesis: Investigating the Role of Neurexins in the Early Evolution of the Nervous System
Graduation Date: 2022 October 31

 

Sofiia Kosar

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Characterization of Nanoscale Defects in Hybrid Perovskite Thin Films for Photovoltaic Applications
Graduation Date: 2022 September 30

 

Aliya Mari Purser

Supervisor Name: Izumi  Fukunaga
Research Unit: Sensory and Behavioural Neuroscience Unit
Thesis: Designing a Tractable Behavioral Paradigm for Investigating Olfactory Figure-ground Segregation
Graduation Date: 2022 September 30

 

Dongqi Han

Supervisor Name: Jun Tani
Research Unit: Cognitive Neurorobotics Research Unit
Thesis: Self-Organization of Action Hierarchy and Inferring Latent States in Deep Reinforcement Learning with Stochastic Recurrent Neural Networks
Graduation Date: 2022 September 30

 

Takeshi Ricardo Tabuchi Yagui

Supervisor Name: Yohei Yokobayashi
Research Unit: Nucleic Acid Chemistry and Engineering Unit
Thesis: High-Throughput Screening of Cell-Free Riboswitches for Chemical Communication between Microdroplets
Graduation Date: 2022 September 30

 

Saahil Acharya

Supervisor Name: Akihiro Kusumi
Research Unit: Membrane Cooperativity Unit
Thesis: SynGAP Condensates Recruit PSD95, and Selectively Retain Multivalent Receptors, Functioning as the Basic Platform for Generating Neuronal Excitatory Synapses
Graduation Date: 2022 September 30

 

Graduated in AY2021 (Total as of August 2022: 23)

 

Tim Keller

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis:Controlling Superfluid and Insulating States in Interacting Quantum Gases
Graduation Date: 2022 August 31

 

Dmitrii Koldaev

Supervisor Name: Eliot Fried
Research Unit: Mechanics and Materials Unit
Thesis: Mathematical Modeling and Numerical Analysis of Unstretchable Elastic Ribbons
Graduation Date: 2022 August 31

 

Alexandru Mihai

Supervisor Name: Eliot Fried
Research Unit: Mechanics and Materials Unit
Thesis: Soap Film Mediated 3D Self-Assembly: Suspended and Displacement Driven Geometries Using Centimeter-Scale Tiles
Graduation Date: 2022 August 31

 

Shan Zou

Supervisor Name: Denis Konstantinov
Research Unit:Quantum Dynamics Unit
Thesis: Detection of the Rydberg States of Electrons on Superfluid Helium Confined in Microchannel Devices
Graduation Date: 2022 August 1

 

Agneesh Barua

Supervisor Name: Vincent Laudet
Research Unit: Marine Eco-Evo-Devo Unit
Thesis: The Evolutionary Genetics of Venoms: How Nature Created the Perfect Chemical Weapon
Graduation Date: 2022 July 1

 

Makoto Tokoro Schreiber

Supervisor Name: Matthias Wolf
Research Unit: Molecular Cryo-Electron Microscopy Unit
Thesis: Diffraction-Based Experiments in Transmission Electron Microscopy: Lensing, Charging, and Amorphous Structures
Graduation Date: 2022 July 1

 

Ratnesh Kumar Gupta

Supervisor Name: Sile Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Evanescent Field Mediated Interactions of Cold Rubidium Atoms with Optical Nanofiber Guided Light
Graduation Date: 2022 June 1

 

Mai Omar Abdulrahman Ahmed

Supervisor Name: Ichiro Masai
Research Unit:Developmental Neurobiology Unit
Thesis: Investigating the Function of Strip1 in Ganglion Cell Survival and Neural Circuit Formation of the Developing Zebrafish Retina
Graduation Date: 2022 March 31

 

Swathy Babu

Supervisor Name: Ichiro Masai
Research Unit: Developmental Neurobiology Unit
Thesis:Banp Regulates DNA Damage Response and Chromosome Segregation to Promote Cell-cycle Progression and Cell Survival in Zebrafish Retina
Graduation Date: 2022 March 31

 

Jigyasa Arora

Supervisor Name:Tom Bourguignon
Research Unit: Evolutionary Genomics Unit
Thesis:Functional Metagenomics and Evolution of Termite Gut Microbiome
Graduation Date: 2022 March 31

 

Mohieldin Magdy Mahmoud Youssef

Supervisor Name:Tadashi Yamamoto
Research Unit: Cell Signal Unit
Thesis: Role of TOB in the Brain: An Insight into Stress Coping Machinery
Graduation Date: 2022 March 31

 

Larisa Sheloukhova

Supervisor Name: Hiroshi Watanabe
Research Unit:Evolutionary Neurobiology Unit
Thesis:  Molecular Dissection of Ancestral Glia
Graduation Date: 2022 March 31

 

Xunwu Hu

Supervisor Name: Ye Zhang
Research Unit:Bioinspired Soft Matter Unit
Thesis: Developing Integrin-targeted Peptide Assemblies to Direct Cancer Cell migration
Graduation Date: 2022 January 31

 

Evropi Toulkeridou

Supervisor Name: Evan P. Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: Automated segmentation of micro-CT images by deep learning and its application to comparative morphology
Graduation Date: 2022 January 31

 

Masakazu Taira

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: The Role of Serotonin Neurons in Mouse Reward-based Behaviors
Graduation Date: 2022 January 31

 

Yuka Suzuki

Supervisor Name: Evan P. Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: The effects of dispersal network structure on biodiversity pattern and stability in metacommunities
Graduation Date: 2022 January 31

 

Menglin Wang

Supervisor Name: Tom Bourguignon
Research Unit: Evolutionary Genomics Unit
Thesis: Worldwide Historical Biogeography of Termites (Blattodea: Isoptera)
Graduation Date: 2021 December 31

 

Ivan Mbogo

Supervisor Name: Hiroshi Watanabe
Research Unit: Evolutionary Neurobiology Unit
Thesis: The Evolution of Dual Functionality of β-catenin in Metazoans
Graduation Date: 2021 December 31

 

Po-Shun Chuang

Supervisor Name: Satoshi Mitarai
Research Unit: Marine Biophysics Unit
Thesis: From Polyps to Colonies: Applying Polyp Bail-Out to Study Coral Coloniality
Graduation Date: 2021 December 31

 

Tsung-Han Hsieh

Supervisor Name: Hiroki Ishikawa
Research Unit: Immune Signal Unit
Thesis: Deciphering the Role of AP-1 Transcription Factor JunB in CD4+ T Cells
Graduation Date: 2021 October 31

 

Dong Cao

Supervisor Name: Ichiro Maruyama
Research Unit: Information Processing Biology Unit
Thesis: Investigation of Circular RNA Regulation by Cis and Trans Elements in Caenorhabditis Elegans
Graduation Date: 2021 September 30

 

Joel Perez Urquizo

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Terahertz Patch Antenna Microcavity Lasers with Integrated Beam Control
Graduation Date: 2021 September 30

 

Kun-Lung Li

Supervisor Name: Hiroshi Watanabe
Research Unit: Evolutionary Neurobiology Unit
Thesis: A Study of Horizontally Transferred Glycosyl Hydrolase Family 6 Genes in Tunicate Genomes
Graduation Date: 2021 September 30

 

Graduated in AY2020 (Total as of August 2021: 17)

Awarded at AY2020 Graduation Ceremony on May 21 2021

2021 Graduation Ceremony webpage 

YouTube Video of Graduation Ceremony

 

Andreas Thomasen

Supervisor Name: Nic Shannon
Research Unit: Theory of Quantum Matter Unit
Thesis: Topology of Band-Like Excitations in Frustrated Magnets and Their Experimental Signatures
Graduation Date: 2021 August 31

 

Jason Robert Ball

Supervisor Name: Denis Konstantinov
Research Unit: Quantum Dynamics Unit
Thesis: Investigating Color Centers in Diamond for Microwave Quantum Technologies
Graduation Date: 2021 August 31

 

Afshan Jamshaid

Supervisor Name: Yabing Qi
Research Unit: Energy Materials and Surface Sciences Unit
Thesis: Scanning Probe Microscopy Studies of Metal Halide Perovskite Materials
Graduation Date: 2021 May 31

 

Mathias Mikkelsen

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Quenched and Driven Dynamics of One-Dimensional Quantum Systems
Graduation Date: 2021 April 30

 

Seyedeh Sahar Seyed Hejazi

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Atom-Light Interactions via Evanescent Fields
Graduation Date: 2021 April 30

 

Shoko Igarashi (Ota)

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Intrinsic Motivation in Creative Activity
Graduation Date: 2021 April 30

 

Sandrine Burriel

Supervisor Name: Tadashi Yamamoto
Co-Supervisor: Professor Nicholas Luscombe
Research Unit: Cell Signal Unit
Thesis: Functional analysis of LMTK1 in lung adenocarcinoma
Graduation Date: 2021 March 31

 

Shivani Sathish

Supervisor Name: Amy Shen
Research Unit: Micro/Bio/Nanofluidics Unit
Thesis: Surface-based Microfluidic Systems for Enhanced Biomarker Detection
Graduation Date: 2021 March 31

 

Kamila Mustafina

Supervisor Name: Yohei Yokobayashi
Research Unit: Nucleic Acid Chemistry and Engineering Unit
Thesis: Engineering Synthetic Riboswitches for Mammalian Cells
Graduation Date: 2021 February 28

 

Sakurako Watanabe

Supervisor Name: Jeff Wickens
Research Unit: Neurobiology Research Unit
Thesis: Interaction of multiple inputs in plasticity of the corticostriatal synapses
Graduation Date: 2021 January 31

 

Ayaka Usui

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Control and measurement of non-classical properties of cold atomic and optical systems
Graduation Date: 2020 December 31

 

Lin Li

Supervisor Name: Pinaki Chakraborty
Research Unit: Fluid Mechanics Unit
Thesis: Storm moisture and landfalling hurricanes
Graduation Date: 2020 December 31

 

Christina Ripken

Supervisor Name: Síle Nic Chormaic
Co-Supervisor: Professor Noriyuki Satoh
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Micro- and Nanoplastics in Okinawa – Potential Impacts on Planktonic Microalgae and Endosymbiotic Dinoflagellates
Graduation Date: 2020 November 30

 

Adrian David

Supervisor Name: Shinobu Hikami
Co-Supervisor: Professor Yasha Neiman
Research Unit: Mathematical and Theoretical Physics Unit
Thesis: Higher-spin holography in de Sitter space: horizon modes, black holes, and the boundary partition function
Graduation Date: 2020 November 30

 

Shijin Zhang

Supervisor Name: Ye Zhang
Research Unit: Bioinspired Soft Matter Unit
Thesis: Design and Synthesize Small Molecular Self-Assembling Peptides for Biomedical Applications
Graduation Date: 2020 November 30

 

Andrew Winchester

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Spatially and temporally resolved microscopy of traps in hybrid organic-inorganic perovskites
Graduation Date: 2020 October 31

 

Krishna Priya Subramonian Rajasree

Supervisor Name: Síle Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Rydberg Excitation and Other Multiphoton Processes in Cold Rubidium Atoms Near an Optical Nanofibre
Graduation Date: 2020 September 30

 

 

Graduated in AY2019 (Total as of August 2020: 25 )

Awarded at AY2020 Graduation Ceremony on May 21 2021

2021 Graduation Ceremony webpage 

YouTube Video of Graduation Ceremony

 

Hong Huat Hoh

Supervisor Name: Tadashi Yamamoto
Co-Supervisor: Professor Ye Zhang
Research Unit: Cell Signal Unit
Thesis: Study on Alteration of Cellular Phenotypes and Processes in Cancer Using Exogenous Biological Agents
Graduation Date: 2020 August 31

 

Sebastien Lapointe

Supervisor Name: Julia Khusnutdinova
Research Unit: Coordination Chemistry and Catalysis Unit
Thesis: Nickel Complexes of New Electron-Rich, Sterically-Hindered PNP Pincer Ligands
Graduation Date: 2020 August 31

 

Ankur Dhar

Supervisor Name: Tsumoru Shintake
Co-Supervisor: Professor Nic Shannon
Research Unit: Quantum Wave Microscopy Unit
Thesis: Imaging Monopoles in Spin Ice via Electron Holography
Graduation Date: 2020 August 31

 

Farzana Rahman

Supervisor Name: Kenji Doya
Co-Supervisor: Professor Alexander Mikheyev
Research Unit: Neural Computation Unit
Thesis: Identifying the Evolutionary Conditions for the Emergence of Alternative Reproductive Tactics in Simulated Robot Colonies
Graduation Date: 2020 June 30

 

Hemanta Sarmah

Supervisor Name: Tadashi Yamamoto
Co-Supervisor: Professor Yohei Yokobayashi
Research Unit: Cell Signal Unit
Thesis: Molecular and Physiological function of the mammalian CCR4-NOT subunit CNOT9
Graduation Date: 2020 May 31

 

Margaret Mars Brisbin

Supervisor Name: Satoshi Mitarai
Research Unit: Marine Biophysics Unit
Thesis: Characterization of Acantharea-Phaeocystis photosymbioses: distribution, abundance, specificity, maintenance and host-control
Graduation Date: 2020 May 31

 

Sona Rani Roy

Supervisor Name: Ye Zhang
Co-Supervisor: Professor Mitsuhiro Yanagida
Research Unit: Bioinspired Soft Matter Unit
Thesis: Design Integrin-targeted Molecular Self-assembling Peptides for Studying Cancer Migration Inhibition
Graduation Date: 2020 May 31

 

Nishtha Ranawat

Supervisor Name: Ichiro Masai
Research Unit: Developmental Neurobiology Unit
Thesis: Behavioral and transcriptomic analysis of embryonic microglia during colonization and degeneration of zebrafish retina
Graduation Date: 2020 April 30

 

Collin Stecker

Supervisor Name: Yabing Qi
Research Unit: Energy Materials and Surface Sciences Unit
Thesis: Scanning Tunneling Microscopy and Photoelectron Spectroscopy Studies of Lead Halide Perovskite Surfaces, Defect Dynamics and the MAPbX 3 - CuPc Interface
Graduation Date: 2020 April 30

 

Noa Burshtein

Supervisor Name: Amy Shen
Research Unit: Micro/Bio/Nanofluidics Unit
Thesis: Flow Instabilities and Vortex Dynamics in Intersecting Flows
Graduation Date: 2020 April 30

 

Han Yan

Supervisor Name: Nic Shannon
Research Unit: Theory of Quantum Matter Unit
Thesis: Fracton States of Matter: From Holography to Frustrated Magnetism
Graduation Date: 2020 April 30

 

Tadashi Kozuno

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Efficient and Noise-Tolerant Reinforcement Learning Algorithms via Theoretical Analysis of Gap-Increasing and Softmax Operators
Graduation Date: 2020 March 31

 

Leonidas Georgiou

Supervisor Name: Bernd Kuhn
Research Unit: Optical Neuroimaging Unit
Thesis: Astrocyte calcium activity mapping in behaving mice using anterograde axo-astrocytic AAV transfer
Graduation Date: 2020 March 31

 

Shohei Takaoka

Supervisor Name: Tadashi Yamamoto
Co-Supervisor: Professor Hiroaki Kitano
Research Unit: Cell Signal Unit
Thesis: Role of 5’ - 3’ exoribonuclease Xrn1 in energy expenditure and control of obesity
Graduation Date: 2020 March 31

 

Viktoras Lisicovas

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Improvements in optical techniques to investigate the behavior and neuronal network dynamics over long timescales
Graduation Date: 2020 March 31

 

Stefan Pommer

Supervisor Name: Jeff Wickens
Research Unit: Neurobiology Research Unit
Thesis: The effect of serotonin receptor 5-HT1B on lateral inhibition between spiny projection neurons in the mouse striatum
Graduation Date: 2020 February 29

 

Hsieh-Fu Tsai

Supervisor Name: Amy Shen
Research Unit: Micro/Bio/Nanofluidics Unit
Thesis: Glioma on Chips Analysis of glioma cell guidance and interaction in microfluidic-controlled microenvironment enabled by machine learning
Graduation Date: 2020 February 29

 

Dina Mostafa

Supervisor Name: Tadashi Yamamoto
Research Unit: Cell Signal Unit
Thesis: Functional Analysis of CCR4-NOT Complex in Pancreatic β Cell
Graduation Date: 2020 February 29

 

Paavo Parmas

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Total stochastic gradient algorithms and applications to model-based reinforcement learning
Graduation Date: 2020 January 31

 

James Schloss

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Massively parallel split-step Fourier techniques for simulating quantum systems on graphics processing units
Graduation Date: 2019 December 31

 

Mayank Aggarwal

Supervisor Name: Jeff Wickens
Research Unit: Neurobiology Research Unit
Thesis: The Role of Ventral Tegmental Area and Nucleus Accumbens in the Kamin Blocking Effect
Graduation Date: 2019 November 30

 

Bianca Sieveritz

Supervisor Name: Gordon Arbuthnott
Co-Supervisor: Professor Jeff Wickens
Research Unit: Brain Mechanism for Behaviour Unit
Thesis: Ventral motor thalamic projections to prelimbic cortex in cost-benefit decision-making
Graduation Date: 2019 November 30

 

Simon Peter Mekhail

Supervisor Name: Síle Nic Chormaic
Co-Supervisor: Professor Gordon Arbuthnott
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Optical Fiber Probes for in-Vivo Neuronal Compressive Microendoscopy and Mode Analysis in Nanofibers
Graduation Date: 2019 September 30

 

Neil Dalphin

Supervisor Name: Bernd Kuhn
Research Unit: Optical Neuroimaging Unit
Thesis: Two-Photon Voltage Imaging of Supragranular Barrel Cortex in Mice: Oscillations and Responses
Graduation Date: 2019 September 30

 

Sho Kasumie

Supervisor Name: Síle Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Hollow Whispering Gallery Mode Resonators: from Fabrication to Application
Graduation Date: 2019 September 30

 

Graduated in AY2018 (Total as of August 2019: 15)

Awarded at AY2018 Graduation Ceremony on May 25, 2019

2018 Graduation Ceremony webpage 

YouTube Video of Graduation Ceremony

 

Jiabao Chen

Supervisor Name: Denis Konstantinov
Co-Supervisor: Professor Thomas Busch
Research Unit: Quantum Dynamics Unit
Thesis: Coherent control of charged particle systems strongly interacting with microwave photons
Graduation Date: 2019 August 31

 

Thomas Nieddu

Supervisor Name: Síle Nic Chormaic
Research Unit: Light-Matter Interactions for Quantum Technologies Unit
Thesis: Optical Nanofibers for Multiphoton Processes and Selective Mode Interactions with Rubidium
Graduation Date: 2019 July 31

 

Girish Beedessee

Supervisor Name: Noriyuki Satoh
Research Unit: Marine Genomics Unit
Thesis: Genomic insights on secondary metabolism in symbiotic dinoflagellates
Graduation Date: 2019 April 30

 

Yafei Mao

Supervisor Name: Noriyuki Satoh
Co-Supervisor: Professor Evan Economo
Research Unit: Marine Genomics Unit
Thesis: Whole-genome sequence analysis of the evolutionary history of the reef-building coral genus Acropora (Scleractinia, Cnidaria)
Graduation Date: 2019 April 30

 

Nilupaer Abudukeyoumu

Supervisor Name: Gordon Arbuthnott
Research Unit: Brain Mechanism for Behaviour Unit
Thesis:  Cholinergic interneurons in striatal microcircuit dynamics studied with anatomical and behavioral methods
Graduation Date: 2019 March 31

 

Haytham Mohamed

Supervisor Name: Tadashi Yamamoto
Research Unit: Cell Signal Unit
Thesis:  Post-transcriptional regulation of circadian rhythm: Involvement of the CCR4-NOT complex
Graduation Date: 2019 March 31

 

Irina Reshodko

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis:  State engineering in one-dimensional quantum gases
Graduation Date: 2019 March 31

 

Kazuto Kawamura

Supervisor Name: Ichiro Maruyama
Research Unit: Information Processing Biology Unit
Thesis: Forward genetic screen for Caenorhabditis elegans mutants with a progressive decline in adult locomotor function
Graduation Date: 2019 March 31

 

Tosif Ahamed

Supervisor Name: Ichiro Maruyama
Co-Supervisor: Professor Greg Stephens
Research Unit: Information Processing Biology Unit
Thesis:  Capturing the nonlinear dynamics of animal behavior with applications to the nematode C. elegans
Graduation Date: 2019 March 31

 

Masakazu Igarashi

Supervisor Name: Jeffery Wickens
Research Unit: Neurobiology Research Unit
Thesis: The role of interhemispheric cortico-cortical connections in bimanual coordination in the rat
Graduation Date: 2019 February 28

 

Hiroaki Hamada

Supervisor Name: Kenji Doya
Co-Supervisor: Professor Greg Stephens
Research Unit:  Neural Computation Unit
Thesis:  Serotonergic control of brain-wide dynamics
Graduation Date: 2019 January 31

 

Jessica Verena Schulze

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: Spatial and modular regularization in effective connectivity inference from neural activity data
Graduation Date: 2018 December 31

 

Patricia Himeka Wepfer

Supervisor Name: Satoshi Mitarai
Co-Supervisor: Professor Evan Economo
Research Unit: Marine Biophysics Unit
Thesis: Spatial genetic structure in the coral genus Galaxea (Euphyllidae) and their associated Symbiodiniaceae communities
Graduation Date: 2018 November 30

 

Ray Xin Lee

Supervisor Name: Bernd Kuhn
Co-Supervisor: Professor Greg Stephens
Research Unit: Optical Neuroimaging Unit
Thesis: Nature and source of animal spontaneous behaviors: Insights from psychobehavioral development and neuronal population dynamics in mice
Graduation Date: 2018 November 30

 

Jui-Yin Lin

Supervisor Name: Denis Konstantinov
Research Unit: Quantum Dynamics Unit
Thesis Title: Transport properties of strongly correlated 2D electrons confined in microchannels
Graduation Date: 2018 September 30

 

Graduated in AY2017 (Total as of August 2018:13)

Awarded at AY2017 Graduation Ceremony, February 24 2018

2017 Graduation Ceremony page

YouTube Video of Graduation Ceremony

 

Kalale Chola 

Supervisor Name: Tsumoru Shintake
Research Unit: Quantum Wave Microscopy Unit
Thesis: Development of an SPH variant of implicit LES for studying wave energy transport
Graduation Date: 2018 August 31

 

Tsai-Ming Lu

Supervisor Name: Noriyuki Satoh
Research Unit: Marine Genomics Unit
Thesis:  Comparative genomic studies on Dicyema japonicum: the phylogenetic position of dicyemids and the genomic adaptations to parasitic lifestyle
Graduation Date: 2018 August 31

 

E Laine Wong

Supervisor Name: Keshav Dani
Research Unit: Femtosecond Spectroscopy Unit
Thesis: Ultrafast spatiotemporal control of photocarriers in doped semiconductors
Graduation Date: 2018 July 31

 

Chris Reinke

Supervisor Name: Kenji Doya
Research Unit: Neural Computation Unit
Thesis: The Gamma-Ensemble - Adaptive Reinforcement Learning via Modular Discounting
Graduation Date: 2018 June 30

 

Dongrong Zhang

Supervisor Name: Gustavo Gioia
Research Unit: Continuum Physics Unit
Thesis: Spectral theory of turbulent flows
Graduation Date: 2018 June 30

 

Lashmi Piriya Ananda Babu

Supervisor Name: Tomoyuki Takahashi
Co-Supervisor: Professor Jeff Wickens
Research Unit: Cellular & Molecular Synaptic Function Unit
Thesis: Functional roles of microtubules in a giant presynaptic terminal
Graduation Date: 2018 May 17

 

Daisuke Takahashi

Supervisor Name: Hirotaka Sugawara
Research Unit: Advanced Medical Instrumentation Unit
Thesis: Minimal gauged U(1) extension of the Standard Model with classical scale invariance and phenomenology
Graduation Date: 2018 February 21

 

Keita Ikegami

Supervisor Name: Noriyuki Satoh
Research Unit: Marine Genomics Unit
Thesis: Comparative transcriptome analysis of basal deuterostomes and its implications for the phylotypic stage
Graduation Date: 2018 February 9

 

Nino Espinas

Supervisor Name: Hidetoshi Saze
Co-Supervisor: Professor Ulf Skoglund
Research Unit: Plant Epigenetics Unit
Thesis: rCBP-dependent regulation in rice innate immunity
Graduation Date: 2018 February 9

 

Cong Liu

Supervisor Name: Evan Economo
Research Unit: Biodiversity and Biocomplexity Unit
Thesis: Understanding the ecological and evolutionary processes shaping ant biodiversity across spatiotemporal scales
Graduation Date: 2018 January 31 

 

Caroline Starzynski

Supervisor Name: Mitsuhiro Yanagida
Research Unit: G0 Cell Unit
Thesis: Investigating ancient metabolic reactions contributing to G0 quiescence survival in fission yeast S. pombe
Graduation Date: 2017 December 31

 

Zafer Hawash

Supervisor Name: Yabing Qi
Research Unit: Energy Materials and Surface Sciences Unit
Thesis: Surface science studies of perovskite solar cells: spiro-MeOTAD hole transport material and perovskite absorber
Graduation Date: 2017 December 20

 

Rico Pohle

Supervisor Name: Nic Shannon
Research Unit:  Theory of Quantum Matter Unit
Thesis:  Signatures of novel spin liquids in kagome-like lattices
Graduation Date: 2017 December 7

 

Graduated in AY2016 (Total as of August 2017: 7)

Awarded at AY2016 Graduation Ceremony, February 24 2018

Kenneth Baughman

Supervisor Name: Noriyuki Satoh
Research Unit: Marine Genomics Unit
Thesis: Decoding and analysis of the Crown-of-Thorns Starfish Acanthaster planci Genome
Graduation Date: 2017 August 25

 

Dongxin Zhang

Supervisor Name: Fujie Tanaka
Research Unit: Chemistry and Chemical Bioengineering Unit
Thesis: Amine catalyzed functionalization of enolizable ketones
Graduation Date: 2017 August 14

 

Yi-Jyun Luo

Supervisor Name: Noriyuki Satoh
Research Unit: Marine Genomics Unit
Thesis: Insights into lophotrochozoan evolution and the origin of morphological novelties from brachiopod, phoronid, and nemertean genomes
Graduation Date: 2017 August 14

 

Mart Toots

Supervisor Name: Ulf Skoglund
Research Unit: Structural Cellular Biology Unit
Thesis: Exploring the potential of cryo-electron tomography on protein nanocrystals for molecular structure determination
Graduation Date: 2017 July 18

 

Faisal Mahmood

Supervisor Name: Ulf Skoglund
Co-Supervisor: Professor Hiroaki Kitano
Research Unit: Structural Cellular Biology Unit
Thesis: Algorithmic and architectural developments for cryo-electron tomography
Graduation Date: 2017 March 10

 

Lee O'Riordan

Supervisor Name: Thomas Busch
Research Unit: Quantum Systems Unit
Thesis: Non-equilibrium vortex dynamics in rapidly rotating Bose-Einstein condensates
Graduation Date: 2017 March 10

 

Mark Daly

Supervisor Name: Síle Nic Chormaic
Research Unit: Light-Matter Interactions Unit
Thesis: Light-induced interactions using optical near-field devices
Graduation Date: 2017 March 10