Publications

FY2025

  1. Tao G, Ahrendt S, Miyauchi S, Zhu XJ, Peng H, Labutti K, Clum A, Hayes R, Chain PSG, Grigoriev IV, Bonito G, Martin FM, Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution. IMA Fungus https://doi.org/10.3897/imafungus.16.138363 (2025)
  2. Ordon J, Logemann E.,  Maier L.P., Lee T., Dahms E., Oosterwijk A., Flores-Uribe F.,  Miyauchi S., Paoli L., Stolze S.C., Nakagami H., Felix G., Garrido-Oter R., Ma K.W., & Schulze-Lefert P., Conserved immunomodulation and variation in host association by Xanthomonadales commensals in Arabidopsis root microbiota. Nature Plants  https://doi.org/10.1038/s41477-025-01918-w (2025)
  3. Bonito G., Miyauchi S., Hayes R.D., Tan H, Kuo A., Robinson A., Wang X., Van J. W., Kohler A., Fauchery L., Drula E., Niccolò Benucci G.M., Morin E., Ryberg M., Kalsoom Khan F., Cravero M., Longley R., Barry K., Clum A., Duffy K., Lipzen A, LaButti K., Riley R., Singan V., Steindorff A., Wang J, Bruns T, Maurice S., Clowez P., Bindschedler S., Junier P., Chain P., Grigoriev I.V., Martin F.M., Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae Current Biology https://doi.org/10.1016/j.cub.2025.07.037

FY2024

  1. Palkina K., Karataeva T., Perfilov M., Fakhranurova L., Markina N., Somermeyer L., Garcia-Perez E., Vazquez-Vilar M., Rodriguez-Rodriguez M., Vazquez-Vilriales V., Shakhova E., Mitiouchkina T., Belozerova O., Kovalchuk S., Alekberova A., Malyshevskaia A., Bugaeva E., Guglya E.,  Balakireva, A.; Sytov, N.; Bezlikhotnova, A.; Boldyreva, D.; Babenko, V.; Kondrashov F.A., Choob V., Orzaez D., Yampolsky I., Mishin A., Sarkisyan K. A Hybrid Pathway for Self-Sustained Luminescence, Science Advances  doi: 10.1126/sciadv.adk1992(2024)
  2. Rella S. A.,Kulikova Y. A., Minnegalieva A.R., Kondrashov F. A. Complex Vaccination Strategies Prevent the Emergence of Vaccine Resistance. Evolution; international journal of organic evolution doi.org/10.1093/evolut/qpae106 (2024)
  3. Andrianova M., Seplyarskiy V., Terradas M., Sánchez-Heras A.B., Mur P., Soto J., Aiza G., Borràs E., Kondrashov F.A., Kondrashov A.S., Bazykin G., Valle L., Discovery of Recessive Effect of Human Polymerase δ Proofreading Deficiency through Mutational Analysis of POLD1-Mutated Normal and Cancer Cells. European Journal of Human Genetics doi.org/10.1038/s41431-024-01598-8 (2024)
  4. Jeon H W., Iwakawa H., Naramoto S., Herrfurth C., Gutsche N., Schlüter T., Kyozuka J., Miyauchi S., Feussner I., Zachgo S., Nakagami H., Contrasting and conserved roles of NPR pathways in diverged land plant lineages New Phytologist Foundation doi: 10.1111/nph.19981(2024)
  5. Bugge Harder C., Miyauchi S., Virágh M., Kuo A., Thoen E., Andreopoulos B., Lu D, Skrede I., Drula E., Henrissat B., Morin E., Kohler A., Barry K, LaButti K, Salamov A., Lipzen A., Merényi A., Hegedüs B., Baldrian P, Stursova M., Weitz H., Taylor A., Koriabine M., Savage E., Grigoriev I. V., Nagy L.G., Martin F., Kauserud H., Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations Cell Genomics doi: 10.1016/j.xgen.2024.100586 (2024)
  6. Sánchez-García, M., Miyauchi S., Drula E., Martin F., Ryberg M., General Trends of Genomic Signatures of the Ectomycorrhizal Symbiosis in Fungi: A Comparison Across Multiple Lineages Fungal Genomics Springer https://doi.org/10.1007/978-3-031-75666-5_11(2024)
  7. Eichfeld R., Mahdi L.K., De Quattro C., Armbruster L., Endeshaw A.B., Miyauchi S., Hellmann M.J., Cord-Landwehr, S., Peterson D., Singan V., Lail K., Savage E., Ng V., Grigoriev I.V., Langen G., Moerschbacher B.M. and Zuccaro A., Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18-CBM5 chitinase to protect their hosts. New Phytolpgist, https://doi.org/10.1111/nph.20080(2024)

FY2023

  1. Getzke F., Amine Hassan M., Crüsemann M., Malisic M., Zhang P., Ishigaki Y., Böhringer N., Fernández A.J., Wang L., Ordon J., Ma Ka-Wai., Thiergart T., Harbort C.J., Wesseler H., Miyauchi S., Garrido- Oter R., Shirasu K., Schäberle T.F., Hacquard S., Schulze-Lefert P. Cofunctioning of bacterial exometabolites drives root microbiota establishment PNAS, doi:10.1073/pnas.2221508120 (2024)
  2. R.B. Gert K., Panser K., Surm J., Steinmetz B.J., Schleiffer A., Jovine L., Moran Y., Kondrashov F., & Pauli A. Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries, nature communications, doi:10.1038/s41467-023-39317-4 (2023)
  3. Astakhova E.A., Morozov A.A, Byazrova M.G., Sukhova M.M., Mikhailov A.A., Minnegalieva A.R., Gorchakov A.A., Filatov A.V. Antigenic Cartography Indicates That the Omicron BA.1 and BA.4/BA.5 Variants Remain Antigenically Distant to Ancestral SARS-CoV-2 after Sputnik V Vaccination Followed by Homologous (Sputnik V) or Heterologous (Comirnaty) Revaccination, Pub Med, doi: 10.3390/ijms241310493 (2023)
  4. Yotsui I., Matsui H., Miyauchi S., Iwakawa H., Melkonian K., Schluter T., Michavila S., Kanazawa T., Nomura Y., Stolze S.C., Jeon H-W., Yan Y., Harzen A., Sugano S.S., Shirakawa M., Nishihama R., Ichihashi Y., Ibanez S.G., Shirasu K., Ueda T., Kohchi T., Nakagami H. LysM-mediated signaling in Marchantia polymorpha highlights the conservation of pattern-triggered immunity in land plants, Current Biology (Volume 33, Issue 17) doi: /10.1016/j.cub.2023.07.068 (2023)
  5. Levin B., Komaroval A., Simonov E., Tiunov A., Levina M., Golubtsov A., Kondrashov F.,  Meyer A. Speciation and repeated origins of hypertrophied lips in parallel adaptive radiations of cyprinid fish from East Africa, Ecology and Evolution doi: 10.1002/ece3.10523 (2023)
  6. Rella S.A., Kulikova Y.A., Minnegalieva A.R., Kondrashov F.A. Complex vaccination strategies prevent the emergence of vaccine resistance, European Journal of Public Health (Volume 33, Issue Supplement_2) doi: 10.1093/eurpub/ckad160.597 (2023)

FY2022

  1. Plett J.M., Miyauchi S., Morin E., Plett K., Wong-Bajracharya J., Maira de Freitas Pereira, Kuo A., Henrissat B., Drula E., Wojtalewicz D., Riley R., Pangilinan J., Andreopoulos W., LaButti K., Daum C., Yoshinaga Y., Fauchery L., Ng V., Lipzen A., Barry K., Singan V., Guo J., Lebel T., Dutra Costa M., Grigoriev I.V., Martin F., Anderson I.C., Kohler A. Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus. Molecular Biology and Evolution, doi:10.1093/molbev/msad045 (2023)
  2. Pak M.A., Markhieva, K.A., Novikova M.S., Petrov D.S., Vorobyev I.S., Maksimova E.S., Kondrashov F.A., Ivankov D.N. Using AlphaFold to predict the impact of single mutations on protein stability and function. PLoS One, doi: 10.1371/journal.pone.0282689 (2023)