Environmental Science & Informatics (ESI)

Mission

We provide support for environmental research for OIST and for the broader research community.  This includes managing field sites, equipment, and data sets, as well as helping to coordinate permissions with local stakeholders and agencies. We also have considerable experience with outreach including museum displays, and development of environmental education programs. We also provide experienced field teams for research support as well as informatics support services with particular expertise in GIS, Remote-Sensing, acoustic processing and workflows, insect taxonomy and curation, DNA barcoding, and molecular phylogenetics.

 

Services

Photo of urban open OKEON (field network) site with ESI field team

Field Work

Our expert team has a combined decades of experience carrying out field experiments and field maintenance at sites all around Okinawa. Our field team maintains the 24 OKEON field network sites, has experience sorting insects by genus, managing slam traps, acoustic recorders, camera traps, weather stations and experience solving practical problems in Okinawa's challenging environment. Our section can help with planning and conducting field research, manage community contacts and permissions, and carry out and maintain experiments in the field.

Pair of Pycnotus sinensis atop tree

Acoustic

Environmental acoustic recording in Okinawa has been ongoing at OKEON sites since 2017 comprising, as of 2025, 13.5 thousand hours (37~ years) of data across all sites. ESI maintains these recordings, along with models for detecting bird songs, acoustic identification workflows, and preliminary acoustic statistics (such as biophony and anthrophony metrics). We are experienced with Kaleidoscope bioacoustics sound analysis tools, creation of bespoke acoustic identification workflows, acoustic statistics processing, and graphing. We also house high quality handheld field recorders for one off recordings or deployable boxes for long term acoustic monitoring, including underwater deployments.

Image of Cyllorhynchites_ursulus_transp

Specimens & Collection

The OIST Insect Collection is a rich, diverse treasure trove of insects and other invertebrates collected from across Okinawa Prefecture. The collection primarily consists of material collected over the last decade (2015-present) in Malaise traps deployed at 24 sites across the OKEON field network. The dry collection contains approximately 240 drawers (~60,000 specimens) of mounted ants and beetles identified to the species level. The wet collection is largely unsorted and contains a diversity of insects and arthropods stored in high concentration ethanol and freezers to preserve DNA. The collection is ideal for a wide range of project types, including systematics, evolution, taxonomy, ecology, and genomic studies. ESI’s in-house collection is available for research along with expert consultation to aid you in your projects. We can also assist with insect identification (including dissections), z-stack micro imaging, and insect-specific preparations for X-ray micro-CT scanning. 

KNN Depth map test over Motobu in Okinawa

Informatics & Data

At ESI we maintain datasets for the 24 OKEON field sites, specimen collections, acoustic recordings, weather stations, camera traps, and various other data. We can help with finding data, starting a project, or doing analysis. We also collect and have experience with GIS datasets such as satellite image analysis, soils, water features, land use & land cover, elevation & bathymetry, and watershed analysis. We can also help with cartographic and mapping tasks, or spatial analysis both in Okinawa and worldwide.

ESI member talking about OKEON field network at community event

Outreach & Facilitation

The members of ESI have spent years maintaining relationships with the local community in Okinawa as well as stakeholders and government agencies to fulfill our roles in both research and education. We have developed multiple educational programs for young students as well as museum displays, community collaboration, and outreach programs. We can help connect you with the relevant parties to discuss field research, or other outreach you may wish to do. We can also aid in applying for research permissions, field sampling, and contracts.

OKEON field network

24 sites across OKINAWA since 2015

  • OKEON Project
  • SLAM traps
  • Acoustic Recorders
  • Camera Traps
  • Weather Stations
  • Imaging

ESI Equipment Database

Equipment Categories

User in forest with LiDAR backpack
Field LiDAR

ESI houses a 300 meter range LiDAR scanner usable with a backpack or large drone. ESI does not currently provide drone services.

Arrow 100 w/ cap reciever, shoulder carry, and main unit
Field Computation

We have 3 High quality GPS receivers and a handheld GPS unit, a field computer that can handle Okinawa's wet environment, digital calipers, and other equipment useful for data collection and recording in the field.

Parabolic microphone with 22" dish, hand handle, and tripod mount.
Acoustic components

We have multiple microphones and other related acoustic recording units to facilitate acoustic research including long range Parabolic Microphone, Gain adjustment and recorder mixer, high quality handheld recorder, long term large/micro acoustic recording units, including underwater recorders.

User in lab demonstrating multilayer z-stacking microscope
Imaging

We have equipment to aid in taking field pictures, imaging specimens, and general photography. Our equipment includes z-stacking microscope imaging, long-range lenses for photography, 360° video and panoramic camera, and associated camera equipment such as bags, tripods, and mounts.

Ocean Spectrometer with Cables
Spectrometer

We house a small spectrometer useful for taking field measurements, or small scale measurements in lab conditions.

User in field deploying eDNA sampler
Field Sampling

We have various tools to help collect field data, including eDNA sampler, insect capture devices, laser rangefinder, portable speakers, batteries, charging banks, field tools such as shovels, saws, gloves, jackets and more are available to help you collect samples in the field.